Category: Caffe

Metric Learning : Caffe Example

Posted on by admin

Prepare (MNIST Data)

  1. python gen_pairwise_imglist.py
  2. /home/water/caffe/build/tools/convert_imageset ./ train.txt train_lmdb --gray
  3. /home/water/caffe/build/tools/convert_imageset ./ train_p.txt train_p_lmdb --gray
  4. /home/water/caffe/build/tools/convert_imageset ./ val.txt val_lmdb --gray
  5. /home/water/caffe/build/tools/convert_imageset ./ val_p.txt val_p_lmdb --gray

Based on Caffe siamese

Train loss vs iters

Visualize Result (Normal)

Visualize Result (τ- SNE)

MNIST : Caffe

Posted on by admin

Prepare

  1. wget http://deeplearning.net/data/mnist/mnist.pkl.gz

Loading data from pkl

  1. import os
  2. import pickle, gzip
  3. from matplotlib import pyplot
  4.  
  5. print('Loading data from mnist.pkl.gz ...')
  6. with gzip.open('mnist.pkl.gz', 'rb') as f:
  7.     train_set, valid_set, test_set = pickle.load(f)
  8.  
  9. imgs_dir = 'mnist'
  10. os.system('mkdir -p {}'.format(imgs_dir))
  11. datasets = {'train': train_set, 'val': valid_set, 'test': test_set}
  12.  
  13. for dataname, dataset in datasets.items():
  14.     print('Converting {} dataset ...'.format(dataname))
  15.     data_dir = os.sep.join([imgs_dir, dataname])
  16.  
  17.     os.system('mkdir -p {}'.format(data_dir))
  18.  
  19.     for i, (img, label) in enumerate(zip(*dataset)):
  20.  
  21.         filename = '{:0>6d}_{}.jpg'.format(i, label)
  22.  
  23.         filepath = os.sep.join([data_dir, filename])
  24.  
  25.         img = img.reshape((28, 28))
  26.  
  27.         pyplot.imsave(filepath, img, cmap='gray')
  28.         if (i + 1) % 10000 == 0:
  29.             print('{} images converted!'.format(i + 1))

Prepare imglist for Caffe

  1. import os
  2. import sys
  3.  
  4. input_path = sys.argv[1].rstrip(os.sep)
  5.  
  6. output_path = sys.argv[2]
  7.  
  8. filenames = os.listdir(input_path)
  9. with open(output_path, 'w') as f:
  10.     for filename in filenames:
  11.  
  12.         filepath = os.sep.join([input_path, filename])
  13.  
  14.         label = filename[: filename.rfind('.')].split('_')[1]
  15.  
  16.         line = '{} {}\n'.format(filepath, label)
  17.         f.write(line)

Convert to LMDB

  1. python gen_caffe_imglist.py mnist/train train.txt
  2. python gen_caffe_imglist.py mnist/val val.txt
  3. python gen_caffe_imglist.py mnist/test test.txt
  4.  
  5. /home/d/Documents/caffe/build/tools/convert_imageset ./ train.txt train_lmdb --gray --shuffle
  6. /home/d/Documents/caffe/build/tools/convert_imageset ./ val.txt val_lmdb --gray --shuffle
  7. /home/d/Documents/caffe/build/tools/convert_imageset ./ test.txt test_lmdb --gray --shuffle

Train (LeNet-5)

  1. /home/d/Documents/caffe/build/tools/caffe train -solver lenet_solver.prototxt -log_dir ./

Log Visualization

loss_iters

  1. python /home/d/Documents/caffe/tools/extra/plot_training_log.py.example 2 loss_iters.png caffe.ubuntu.d.log


accuracy_iters

  1. python /home/d/Documents/caffe/tools/extra/plot_training_log.py.example 0 accuracy_iters.png caffe.ubuntu.d.log


Test Model Accuracy

  1. /home/d/Documents/caffe/build/tools/caffe test -model lenet_test.prototxt -weights mnist_lenet_iter_36000.caffemodel -iterations 100

Test Model Time

  1. /home/d/Documents/caffe/build/tools/caffe time -model lenet.prototxt

Augmented, Train

loss_iters

  1. python /home/d/Documents/caffe/tools/extra/plot_training_log.py.example 2 loss_iters_aug.png mnist_train.log mnist_train_with_augmentation.log




accuracy_iters

  1. python /home/d/Documents/caffe/tools/extra/plot_training_log.py.example 0 accuracy_iters_aug.png mnist_train.log mnist_train_with_augmentation.log



Update solver max_iter, Train

  1. /home/d/Documents/caffe/build/tools/caffe train -solver lenet_solver_aug.prototxt -snapshot mnist_aug_lenet_iter_36000.solverstate -log_dir ./

Caffe Sample

Posted on by admin

Gen HDF5 Data

  1. import pickle
  2. import numpy as np
  3. import h5py
  4.  
  5. with open('data.pkl', 'rb') as f:
  6.     samples, labels = pickle.load(f)
  7. sample_size = len(labels)
  8.  
  9. samples = np.array(samples).reshape((sample_size, 2))
  10. labels = np.array(labels).reshape((sample_size, 1))
  11.  
  12. h5_filename = 'data.h5'
  13. with h5py.File(h5_filename, 'w') as h:
  14.     h.create_dataset('data', data=samples)
  15.     h.create_dataset('label', data=labels)
  16.  
  17. with open('data_h5.txt', 'w') as f:
  18.     f.write(h5_filename)

Network Train

  1. name: "SimpleMLP"
  2. layer {
  3.     name:   "data"
  4.     type:   "HDF5Data"
  5.     top:    "data"
  6.     top:    "label"
  7.     include {
  8.         phase:  TRAIN
  9.     }
  10.     hdf5_data_param {
  11.         source: "data_h5.txt"
  12.         batch_size: 41
  13.     }
  14. }
  15. layer {
  16.     name:   "fc1"
  17.     type:   "InnerProduct"
  18.     bottom: "data"
  19.     top:    "fc1"
  20.     inner_product_param {
  21.         num_output: 2
  22.         weight_filler   {
  23.             type:   "uniform"
  24.         }
  25.     }
  26. }
  27. layer {
  28.     name:   "sigmoid1"
  29.     type:   "Sigmoid"
  30.     bottom: "fc1"
  31.     top:    "sigmoid1"
  32. }
  33. layer {
  34.     name:   "fc2"
  35.     type:   "InnerProduct"
  36.     bottom: "sigmoid1"
  37.     top:    "fc2"
  38.     inner_product_param {
  39.         num_output: 2
  40.         weight_filler   {
  41.             type:   "uniform"
  42.         }
  43.     }
  44. }
  45. layer {
  46.     name:   "loss"
  47.     type:   "SoftmaxWithLoss"
  48.     bottom: "fc2"
  49.     bottom: "label"
  50.     top:    "loss"
  51. }

Gen Network Picture

  1. python /home/d/Documents/caffe/python/draw_net.py train.prototxt mlp_train.png --rankdir BT

Network Solver

  1. net:    "train.prototxt"
  2. base_lr:    0.15
  3. lr_policy:  "fixed"
  4. display:    100
  5. max_iter:   2000
  6. momentum:   0.95
  7. snapshot_prefix:    "simple_mlp"
  8. solver_mode:    CPU

Start Train

  1. /home/d/Documents/caffe/build/tools/caffe train -solver solver.prototxt

Network Test

  1. name: "SimpleMLP"
  2. input:  "data"
  3. input_shape {
  4.     dim:    1
  5.     dim:    2
  6. }
  7. layer {
  8.     name:   "fc1"
  9.     type:   "InnerProduct"
  10.     bottom: "data"
  11.     top:    "fc1"
  12.     inner_product_param {
  13.         num_output: 2
  14.     }
  15. }
  16. layer {
  17.     name:   "sigmoid1"
  18.     type:   "Sigmoid"
  19.     bottom: "fc1"
  20.     top:    "sigmoid1"
  21. }
  22. layer {
  23.     name:   "fc2"
  24.     type:   "InnerProduct"
  25.     bottom: "sigmoid1"
  26.     top:    "fc2"
  27.     inner_product_param {
  28.         num_output: 2
  29.     }
  30. }
  31. layer {
  32.     name:   "softmax"
  33.     type:   "Softmax"
  34.     bottom: "fc2"
  35.     top:    "prob"
  36. }

Start Test

  1. import sys
  2. import pickle
  3. import numpy as np
  4. import matplotlib.pyplot as plt
  5. from mpl_toolkits.mplot3d import Axes3D
  6. sys.path.append('/home/d/Documents/caffe/python')
  7. import caffe
  8.  
  9. net = caffe.Net('test.prototxt', 'simple_mlp_iter_2000.caffemodel', caffe.TEST)
  10.  
  11. with open('data.pkl', 'rb') as f:
  12.     samples, labels = pickle.load(f)
  13. samples = np.array(samples)
  14. labels = np.array(labels)
  15.  
  16. X = np.arange(0, 1.05, 0.05)
  17. Y = np.arange(0, 1.05, 0.05)
  18. X, Y = np.meshgrid(X, Y)
  19.  
  20. grids = np.array([[X[i][j], Y[i][j]] for i in range(X.shape[0]) for j in range(X.shape[1])])
  21.  
  22. grid_probs = []
  23. for grid in grids:
  24.     net.blobs['data'].data[...] = grid.reshape((1, 2))[...]
  25.     output = net.forward()
  26.     grid_probs.append(output['prob'][0][1])
  27. grid_probs = np.array(grid_probs).reshape(X.shape)
  28. fig = plt.figure('Sample Surface')
  29. ax = fig.gca(projection='3d')
  30. ax.plot_surface(X, Y, grid_probs, alpha=0.15, color='k', rstride=2, cstride=2, lw=0.5)
  31.  
  32. samples0 = samples[labels==0]
  33. samples0_probs = []
  34. for sample in samples0:
  35.     net.blobs['data'].data[...] = sample.reshape((1, 2))[...]
  36.     output = net.forward()
  37.     samples0_probs.append(output['prob'][0][1])
  38. samples1 = samples[labels==1]
  39. samples1_probs = []
  40. for sample in samples1:
  41.     net.blobs['data'].data[...] = sample.reshape((1, 2))[...]
  42.     output = net.forward()
  43.     samples1_probs.append(output['prob'][0][1])
  44.  
  45. ax.scatter(samples0[:, 0], samples0[:, 1], samples0_probs, c='r', marker='o', s=50)
  46. ax.scatter(samples1[:, 0], samples1[:, 1], samples1_probs, c='b', marker='^', s=50)
  47.  
  48. plt.show()

Caffe Installation : Ubuntu 16.04

Posted on by admin

Prepare

  1. sudo apt update
  2. sudo apt install build-essential git libatlas-base-dev
  3. sudo apt-get install python-pip
  4. pip install --upgrade pip
  5. sudo apt-get install graphviz
  6. sudo pip install graphviz
  7. sudo apt install libprotobuf-dev libleveldb-dev libsnappy-dev libboost-all-dev libhdf5-serial-dev protobuf-compiler gfortran libjpeg62 libfreeimage-dev libgoogle-glog-dev libbz2-dev libxml2-dev libxslt-dev libffi-dev libssl-dev libgflags-dev liblmdb-dev python-yaml
  8. sudo apt-get install libopencv-dev python-opencv

Config

  1. # git clone https://github.com/BVLC/caffe. git
  2. # Or
  3. unzip caffe-master.zip 
  4. cd caffe-master/
  5. cp Makefile.config.example Makefile.config
  6.  
  7. d@ubuntu:~/Documents/caffe$ diff Makefile.config.example Makefile.config
  8. 8c8
  9. < # CPU_ONLY := 1
  10. ---
  11. > CPU_ONLY := 1
  12. 94c94
  13. < # WITH_PYTHON_LAYER := 1
  14. ---
  15. > WITH_PYTHON_LAYER := 1
  16. 97,98c97,98
  17. < INCLUDE_DIRS := $(PYTHON_INCLUDE) /usr/local/include
  18. < LIBRARY_DIRS := $(PYTHON_LIB) /usr/local/lib /usr/lib
  19. ---
  20. > INCLUDE_DIRS := $(PYTHON_INCLUDE) /usr/local/include /usr/include/hdf5/serial/
  21. > LIBRARY_DIRS := $(PYTHON_LIB) /usr/local/lib /usr/lib /usr/lib/x86_64-linux-gnu/hdf5/serial/
  22. d@ubuntu:~/Documents/caffe$

Compile & Test

  1. export LD_LIBRARY=$LD_LIBRARY:/usr/include/hdf5
  2. export PYTHONPATH=$PYTHONPATH:/home/d/Documents/caffe/python
  3. make pycaffe -j
  4. make all -j
  5. make test -j
  6. make runtest

virtual memory exhausted

  1. sudo mkdir /opt/images/
  2. sudo rm -rf /opt/images/swap
  3. sudo dd if=/dev/zero of=/opt/images/swap bs=1024 count=10240000
  4. sudo mkswap /opt/images/swap
  5. sudo swapon /opt/images/swap